R Notes for Bioinformatics

A collection of notes describing a few aspects of R for bioinformatics.

Contents:

NB: still need to check every example.

General

General-purpose documentation.

• R data structures
• Data manipulation/aggregation
• String manipulation
• Efficient programming
• Expression evaluation
• Input/output
• Object-Oriented programming in R
• Packages
• Workspace management

Graphics

Introductions to three graphics systems used in R : “base”, “lattice”, “ggplot2”.

• R graphics : base graphics
• R graphics : Lattice
• R graphics : ggplot2
• Ggplot2: how to...

Proteomics

A toolbox for miscellaneous proteomics goals.

• UniProt and biomaRt

This work by Celine Hernandez is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported License.